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fastCRW Pergamon
Research · EU

Europe PMC

www.ebi.ac.uk

Life-science literature search across PubMed, PMC, preprints and patents, with citation counts and full-text links.

Showing the catalogue

1Request

SOURCE:ID pairs, comma-separated, up to 8 per call. e.g. MED:23245604 or PMC:PMC3258128.

Restrict to one entity type.

Restrict to annotations found in one section of the paper.

1 credit⌘ ↵
Code follows the fields above
curl "https://api.fastcrw.com/v1/data/europepmc/annotations?articleIds=MED%3A23245604" \
  -H "Authorization: Bearer $FASTCRW_API_KEY"

2Response example

A sample shape. Press Run to see live data from Europe PMC.

sourceextIdpmcidannotationsfullTextIdList
MED23245604PMC10790329[{"prefix":"easles, typhoid and ","exact":"parathyroid","postfix":", leishmaniasis, acu","tags":[{"name":"parathyroid gland","uri":"http://purl.obolibrary.org/obo/UBERON_0001132"}],"id":"http://europepmc.org/abstract/MED/23245604#ontogene-b716ad4848473fda8dfa4d13c6110869","type":"Organ Tissue","section":"Abstract (http://purl.org/dc/terms/abstract)","provider":"OntoGene"},{"prefix":"ubcause for chronic ","exact":"kidney","postfix":" disease, maternal d","tags":[{"name":"kidney","uri":"http://purl.obolibrary.org/obo/UBERON_0002113"}],"id":"http://europepmc.org/abstract/MED/23245604#ontogene-3189afee5fc721ed3dac190f49f843ff","type":"Organ Tissue","section":"Abstract (http://purl.org/dc/terms/abstract)","provider":"OntoGene"},"… 276 more items"]["PMC10790329"]

Attribution: Source: Europe PMC

Licence: EMBL-EBI itself places no additional restrictions on the use or redistribution of the data available via its Data Resources and Tools other than those provided by the original data owners, unless otherwise specified in these Terms of Use.

Ask with this source

A prompt for your agent that names this source and how to call it through the crw MCP.

  • Text-mined annotations for an article

    Use Europe PMC (europepmc) from fastCRW Pergamon, capability "Text-mined annotations for an article" (annotations). You want the biological entities a paper actually mentions, located in its text, rather than its bibliographic metadata. Example options: articleIds=MED:23245604, type=Gene_Proteins, section=Abstract. Use the crw MCP tools: crw_find_data to confirm the source and its options, then crw_get_data with provider "europepmc" and capability "annotations". Tell me the credits used and cite the licence from the response. If the crw MCP tools are missing, install them with: npx -y crw-mcp install --api-key <your fastCRW API key>

  • Article detail by identifier

    Use Europe PMC (europepmc) from fastCRW Pergamon, capability "Article detail by identifier" (article). You hold a PMID, PMCID or DOI and want that single article's complete metadata. Example options: id=23245604. Use the crw MCP tools: crw_find_data to confirm the source and its options, then crw_get_data with provider "europepmc" and capability "article". Tell me the credits used and cite the licence from the response. If the crw MCP tools are missing, install them with: npx -y crw-mcp install --api-key <your fastCRW API key>

  • Articles citing this one

    Use Europe PMC (europepmc) from fastCRW Pergamon, capability "Articles citing this one" (citations). You have an article and want to see the later work that cites it. Example options: source=MED, id=23245604, page=1. Use the crw MCP tools: crw_find_data to confirm the source and its options, then crw_get_data with provider "europepmc" and capability "citations". Tell me the credits used and cite the licence from the response. If the crw MCP tools are missing, install them with: npx -y crw-mcp install --api-key <your fastCRW API key>

  • Search research grants

    Use Europe PMC (europepmc) from fastCRW Pergamon, capability "Search research grants" (grants). You want to know who has been funded to work on a subject, and by whom, rather than what they published. Example options: query=malaria. Use the crw MCP tools: crw_find_data to confirm the source and its options, then crw_get_data with provider "europepmc" and capability "grants". Tell me the credits used and cite the licence from the response. If the crw MCP tools are missing, install them with: npx -y crw-mcp install --api-key <your fastCRW API key>